Tutorials


Topic Replies Views Activity
CBS Server - Getting started with using the server
cbs-server

Using the Virtual Desktops The compute server uses a VMware Virtual Desktop Infrastructure (VDI) to instantiate virtual clones of the linux machine each time a user logs in. Logging in to the VDI The server is accessed …

2 2427 November 6, 2025
CBS Server - Requesting an account
cbs-server

Computational Brain Science Group Server The Computational Brain Science Group Server is a new, local server system for those with computational neuroscience needs. The server is intended for research use only. There a…

3 2025 March 4, 2024
About the Tutorials category
0 266 April 30, 2021
Using gh CLI to authenticate GitHub on Compute Canada and/or CBS Server
git ,  compute-canada ,  cbs-server
0 2679 May 18, 2023
Running snakebids apps on Compute Canada and CBS Server
compute-canada ,  bids ,  cbs-server ,  snakebids ,  snakemake
0 699 April 3, 2023
Uploading large datasets from CBS server to CBRAIN
bids ,  cbs-server ,  cbrain
0 885 March 17, 2023
Python and CUDA 11.3 for CBS server GPU
python ,  cbs-server
1 728 October 12, 2022
New tool for monitoring home directory size on CBS server - gdu
cbs-server
0 479 September 8, 2022
"Things I wish I knew" tutorial series
0 456 August 30, 2022
Accessing OpenNeuro datasets on the CBS Server
open-data ,  datalad ,  cbs-server
0 1118 June 3, 2022
Fixing Jupyter notebook/lab nfs4 errors on the CBS server
python ,  cbs-server ,  jupyter
1 2037 April 30, 2022
Instructions for using fMRIPrep and other bids apps on the CBS server
bidsapp ,  cbs-server ,  fmriprep
1 764 April 22, 2022
Removing background noise from MP2RAGE images
mp2rage ,  mri ,  7t
5 1562 December 10, 2021
Qsm_sstv pipeline
qsm_sstv ,  pipeline ,  qsm ,  bidsapp
2 750 July 28, 2021
Creating general purpose python virtual environment on CBS server
python ,  cbs-server
0 820 June 25, 2021
Creating cifti dense scalar from gifti metric files using HCP workbench
workbench
1 897 June 24, 2021
Setting up Gadgetron on Windows using NoMachine
0 366 June 11, 2021
Remote access to on campus restricted resources
2 727 May 26, 2021
Introduction to sharing code
open-science ,  git ,  open-analysis
0 432 April 30, 2021
Choosing an Open Data Repository
open-science ,  open-data
0 1757 April 30, 2021
Installing Datalad on Compute Canada
open-data ,  hcp ,  compute-canada
0 1246 April 30, 2021
BIDS and autobids - Getting Started
autobids ,  bids
0 1265 April 30, 2021
MR Image format conversion
0 1269 May 3, 2021
CFMM Gitlab repositories
1 539 May 3, 2021
Setting up and using a Gitlab repository
0 300 May 3, 2021
Transfer files with rclone
0 1010 May 3, 2021
Open Data: What is it and why is it important?
0 325 April 30, 2021
Setting up Compute Canada environment with CBS/CFMM allocation
0 350 April 30, 2021