Tutorials


Topic Replies Views Activity
CBS Server - Getting started with using the server
cbs-server

Using the Virtual Desktops The compute server uses a VMware Virtual Desktop Infrastructure (VDI) to instantiate virtual clones of the linux machine each time a user logs in. Logging in to the VDI The server is accessed …

2 2358 November 6, 2025
CBS Server - Requesting an account
cbs-server

Computational Brain Science Group Server The Computational Brain Science Group Server is a new, local server system for those with computational neuroscience needs. The server is intended for research use only. There a…

3 1988 March 4, 2024
About the Tutorials category
0 254 April 30, 2021
Using gh CLI to authenticate GitHub on Compute Canada and/or CBS Server
git ,  compute-canada ,  cbs-server
0 2197 May 18, 2023
Running snakebids apps on Compute Canada and CBS Server
compute-canada ,  bids ,  cbs-server ,  snakebids ,  snakemake
0 670 April 3, 2023
Uploading large datasets from CBS server to CBRAIN
bids ,  cbs-server ,  cbrain
0 854 March 17, 2023
Python and CUDA 11.3 for CBS server GPU
python ,  cbs-server
1 694 October 12, 2022
New tool for monitoring home directory size on CBS server - gdu
cbs-server
0 447 September 8, 2022
"Things I wish I knew" tutorial series
0 438 August 30, 2022
Accessing OpenNeuro datasets on the CBS Server
open-data ,  datalad ,  cbs-server
0 1070 June 3, 2022
Fixing Jupyter notebook/lab nfs4 errors on the CBS server
python ,  cbs-server ,  jupyter
1 1981 April 30, 2022
Instructions for using fMRIPrep and other bids apps on the CBS server
bidsapp ,  cbs-server ,  fmriprep
1 735 April 22, 2022
Removing background noise from MP2RAGE images
mp2rage ,  mri ,  7t
5 1524 December 10, 2021
Qsm_sstv pipeline
qsm_sstv ,  pipeline ,  qsm ,  bidsapp
2 721 July 28, 2021
Creating general purpose python virtual environment on CBS server
python ,  cbs-server
0 801 June 25, 2021
Creating cifti dense scalar from gifti metric files using HCP workbench
workbench
1 878 June 24, 2021
Setting up Gadgetron on Windows using NoMachine
0 356 June 11, 2021
Remote access to on campus restricted resources
2 702 May 26, 2021
Introduction to sharing code
open-science ,  git ,  open-analysis
0 406 April 30, 2021
Choosing an Open Data Repository
open-science ,  open-data
0 1594 April 30, 2021
Installing Datalad on Compute Canada
open-data ,  hcp ,  compute-canada
0 1207 April 30, 2021
BIDS and autobids - Getting Started
autobids ,  bids
0 1240 April 30, 2021
MR Image format conversion
0 1209 May 3, 2021
CFMM Gitlab repositories
1 514 May 3, 2021
Setting up and using a Gitlab repository
0 287 May 3, 2021
Transfer files with rclone
0 964 May 3, 2021
Open Data: What is it and why is it important?
0 317 April 30, 2021
Setting up Compute Canada environment with CBS/CFMM allocation
0 338 April 30, 2021